ミラー元
https://github.com/prise6/aVirtualTwins.git
同期済み 2024-04-26 19:10:26 +02:00
Add 'rmarkdown' in suggest field + update infos
このコミットが含まれているのは:
コミット
a7b27f51b2
|
@ -3,4 +3,5 @@
|
|||
^data-raw$
|
||||
^draft$
|
||||
^NEWS$
|
||||
^cran-comments.md$
|
||||
^cran-comments.md$
|
||||
^revdep$
|
||||
|
|
1
.gitignore
vendor済み
1
.gitignore
vendor済み
|
@ -3,3 +3,4 @@
|
|||
.RData
|
||||
/drafts/*
|
||||
inst/doc
|
||||
/revdep/.cache.rds
|
||||
|
|
|
@ -1,7 +1,7 @@
|
|||
Package: aVirtualTwins
|
||||
Type: Package
|
||||
Title: Adaptation of Virtual Twins Method from Jared Foster
|
||||
Version: 1.0.0.9000
|
||||
Version: 1.0.1
|
||||
Date: 2016-10-09
|
||||
Authors@R: person("Francois", "Vieille", email = "vieille.francois@gmail.com",
|
||||
role = c("aut", "cre"))
|
||||
|
@ -18,7 +18,8 @@ Imports:
|
|||
Suggests:
|
||||
caret,
|
||||
knitr,
|
||||
rpart.plot
|
||||
rpart.plot,
|
||||
rmarkdown
|
||||
Depends:
|
||||
R (>= 3.2.0),
|
||||
Collate:
|
||||
|
@ -42,4 +43,4 @@ Collate:
|
|||
'tree.reg.R'
|
||||
'tree.wrapper.R'
|
||||
VignetteBuilder: knitr
|
||||
RoxygenNote: 5.0.1
|
||||
RoxygenNote: 6.0.1
|
||||
|
|
7
NEWS
7
NEWS
|
@ -1,3 +1,10 @@
|
|||
aVirtualTwins 1.0.1 (2018-01-30)
|
||||
----------------------------------------------------------------
|
||||
|
||||
* Fix CRAN warning : CRAN packages using undeclared packages in vignettes
|
||||
* waiting for submission approval
|
||||
|
||||
|
||||
aVirtualTwins 1.0.0.9000 (2016-10-10)
|
||||
----------------------------------------------------------------
|
||||
|
||||
|
|
|
@ -1,3 +1,32 @@
|
|||
This is the second submission
|
||||
|
||||
----------------------------------------------------------------
|
||||
|
||||
## v1.0.1 : patch to cran warning:
|
||||
|
||||
>CRAN packages using undeclared packages in vignettes
|
||||
|
||||
`rmarkdown` seems to be the issue. Added rmarkdown to suggest field.
|
||||
|
||||
## Test environments
|
||||
|
||||
* Linux, Debian jessie, R 3.4.3
|
||||
* win-builder (devel and release)
|
||||
|
||||
|
||||
## R CMD check result
|
||||
|
||||
Status: OK
|
||||
|
||||
R CMD check results
|
||||
0 errors | 0 warnings | 0 notes
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
This is the first submission
|
||||
|
||||
----------------------------------------------------------------
|
||||
|
|
|
@ -33,13 +33,14 @@ So \emph{absolute} method is :
|
|||
|
||||
\item{\code{difft}}{vector of difference between twin1 and twin2}
|
||||
}}
|
||||
|
||||
\section{Methods}{
|
||||
|
||||
\describe{
|
||||
\item{\code{computeDifft()}}{Compute difference between twin1 and twin2. See details.}
|
||||
}}
|
||||
|
||||
\seealso{
|
||||
\code{\link{VT.forest}}, \code{\link{VT.forest.one}},
|
||||
\code{\link{VT.forest.double}}
|
||||
}
|
||||
|
||||
|
|
|
@ -14,6 +14,7 @@ An abstract reference class to compute twin via random forests
|
|||
\describe{
|
||||
\item{\code{...}}{see fields of \code{\link{VT.difft}}}
|
||||
}}
|
||||
|
||||
\section{Methods}{
|
||||
|
||||
\describe{
|
||||
|
@ -23,7 +24,7 @@ An abstract reference class to compute twin via random forests
|
|||
|
||||
\item{\code{run()}}{Compute twin1 and twin2 estimation. Switch treatment if necessary.}
|
||||
}}
|
||||
|
||||
\seealso{
|
||||
\code{\link{VT.difft}}, \code{\link{VT.forest.one}}, \code{\link{VT.forest.double}}
|
||||
}
|
||||
|
||||
|
|
|
@ -31,6 +31,7 @@ This is what \code{computeTwin2()} does.
|
|||
|
||||
\item{\code{...}}{field from parent class : \code{\link{VT.forest}}}
|
||||
}}
|
||||
|
||||
\section{Methods}{
|
||||
|
||||
\describe{
|
||||
|
@ -38,8 +39,8 @@ This is what \code{computeTwin2()} does.
|
|||
|
||||
\item{\code{computeTwin2()}}{Compute twin2 by the other part of data in the other forest. See details.}
|
||||
}}
|
||||
|
||||
\seealso{
|
||||
\code{\link{VT.difft}}, \code{\link{VT.forest}},
|
||||
\code{\link{VT.forest.one}}
|
||||
}
|
||||
|
||||
|
|
|
@ -28,13 +28,14 @@ interactions}
|
|||
|
||||
\item{\code{...}}{field from parent class : \code{\link{VT.forest}}}
|
||||
}}
|
||||
|
||||
\section{Methods}{
|
||||
|
||||
\describe{
|
||||
\item{\code{run()}}{Compute twin1 and twin2 estimation. Switch treatment if necessary.}
|
||||
}}
|
||||
|
||||
\seealso{
|
||||
\code{\link{VT.difft}}, \code{\link{VT.forest}},
|
||||
\code{\link{VT.forest.one}}, \code{\link{VT.forest.double}}
|
||||
}
|
||||
|
||||
|
|
|
@ -24,6 +24,7 @@ what \code{computeTwin1()} and \code{computeTwin2()} functions do.
|
|||
|
||||
\item{\code{...}}{field from parent class : \code{\link{VT.forest}}}
|
||||
}}
|
||||
|
||||
\section{Methods}{
|
||||
|
||||
\describe{
|
||||
|
@ -31,7 +32,7 @@ what \code{computeTwin1()} and \code{computeTwin2()} functions do.
|
|||
|
||||
\item{\code{computeTwin2()}}{Compute twin2 by switching treatment and applying random forest model}
|
||||
}}
|
||||
|
||||
\seealso{
|
||||
\code{\link{VT.difft}}, \code{\link{VT.forest}}, \code{\link{VT.forest.double}}
|
||||
}
|
||||
|
||||
|
|
|
@ -33,6 +33,7 @@ treatments.}
|
|||
\item{\code{type}}{Character : binary or continous. Only binary is currently
|
||||
available.}
|
||||
}}
|
||||
|
||||
\section{Methods}{
|
||||
|
||||
\describe{
|
||||
|
@ -53,6 +54,7 @@ If trt is not NULL, return predictors for T = trt}
|
|||
|
||||
\item{\code{switchTreatment()}}{Switch treatment value.}
|
||||
}}
|
||||
|
||||
\examples{
|
||||
\dontrun{
|
||||
# Default use :
|
||||
|
@ -78,4 +80,3 @@ vt.o$getIncidences()
|
|||
\seealso{
|
||||
\code{\link{VT.difft}}
|
||||
}
|
||||
|
||||
|
|
|
@ -3,10 +3,10 @@
|
|||
\docType{methods}
|
||||
\name{VT.predict}
|
||||
\alias{VT.predict}
|
||||
\alias{VT.predict,RandomForest,data.frame,character-method}
|
||||
\alias{VT.predict,RandomForest,missing,character-method}
|
||||
\alias{VT.predict,randomForest,data.frame,character-method}
|
||||
\alias{VT.predict,RandomForest,data.frame,character-method}
|
||||
\alias{VT.predict,randomForest,missing,character-method}
|
||||
\alias{VT.predict,randomForest,data.frame,character-method}
|
||||
\alias{VT.predict,train,ANY,character-method}
|
||||
\alias{VT.predict,train,missing,character-method}
|
||||
\title{VT.predict generic function}
|
||||
|
|
|
@ -52,6 +52,7 @@ screening field}
|
|||
|
||||
\item{\code{Ahat}}{vector Indicator of beglonging to Ahat}
|
||||
}}
|
||||
|
||||
\section{Methods}{
|
||||
|
||||
\describe{
|
||||
|
@ -74,7 +75,7 @@ screening field}
|
|||
|
||||
\item{\code{run(...)}}{Compute tree with rpart parameters}
|
||||
}}
|
||||
|
||||
\seealso{
|
||||
\code{\link{VT.tree.reg}}, \code{\link{VT.tree.class}}
|
||||
}
|
||||
|
||||
|
|
|
@ -4,6 +4,7 @@
|
|||
\name{aVirtualTwins}
|
||||
\alias{aVirtualTwins}
|
||||
\alias{aVirtualTwins-package}
|
||||
\alias{aVirtualTwins-package}
|
||||
\title{aVirtualTwins : An adapation of VirtualTwins method created by Jared Foster.}
|
||||
\description{
|
||||
aVirtualTwins is written mainly with reference classes. Briefly, there is three kinds of class :
|
||||
|
|
|
@ -43,4 +43,3 @@ data.format <- formatRCTDataset(data, "outcome", "treatment", TRUE)
|
|||
|
||||
|
||||
}
|
||||
|
||||
|
|
|
@ -43,4 +43,3 @@ True subgroup is \emph{PRAPACHE <= 26 & AGE <= 49.80}. \emph{NOTE:} This
|
|||
subgroup is defined with the \emph{lower} event rate (survival = 1) in
|
||||
treatement arm.
|
||||
}
|
||||
|
||||
|
|
|
@ -33,4 +33,3 @@ a VT.object object.
|
|||
}
|
||||
|
||||
}
|
||||
|
||||
|
|
|
@ -69,4 +69,3 @@ parameter forest.type, any of these class can be used with its own parameter.
|
|||
}
|
||||
|
||||
}
|
||||
|
||||
|
|
|
@ -46,4 +46,3 @@ rpart.plot must be loaded. See \code{\link{VT.tree}} for details.
|
|||
}
|
||||
|
||||
}
|
||||
|
||||
|
|
|
@ -56,4 +56,3 @@ See \code{\link{VT.tree}}, \code{\link{VT.tree.class}} and
|
|||
}
|
||||
|
||||
}
|
||||
|
||||
|
|
5
revdep/check.R
ノーマルファイル
5
revdep/check.R
ノーマルファイル
|
@ -0,0 +1,5 @@
|
|||
library("devtools")
|
||||
|
||||
revdep_check()
|
||||
revdep_check_save_summary()
|
||||
revdep_check_print_problems()
|
バイナリ
revdep/checks.rds
ノーマルファイル
バイナリ
revdep/checks.rds
ノーマルファイル
バイナリファイルは表示されません。
読み込み中…
新しいイシューから参照